PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1080.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 197aa    MW: 21196.8 Da    PI: 7.3474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-181868155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrdp++   + r++lg+f++ae+Aa+a++ a+ +++g
  Kaladp0011s1080.1.p 18 TRFRGVRKRP-WGRFAAEIRDPVK---KVRVWLGTFDSAEDAARAYDMAAISFRG 68
                         589*******.**********644...5***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.47E-321878No hitNo description
PfamPF008471.1E-111868IPR001471AP2/ERF domain
SMARTSM003806.1E-371982IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-221978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-311977IPR001471AP2/ERF domain
PROSITE profilePS5103223.8281976IPR001471AP2/ERF domain
PRINTSPR003674.4E-102031IPR001471AP2/ERF domain
PRINTSPR003674.4E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVKGRSMVPV AASDKPETRF RGVRKRPWGR FAAEIRDPVK KVRVWLGTFD SAEDAARAYD  60
MAAISFRGSR AKTNFPSSIP SPPAHPFYES EGFVMQPQRP ASSGMSSTVE SFIGHRSSNP  120
GLVTARRPAS VPNAVREEGD CRSDCDSSST VIDYGDGAVD ADVSRSKVVL PFDLNMPPPA  180
DADLEGYDLI ATALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-222081668ATERF1
3gcc_A1e-222081668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304374.13e-44ethylene-responsive transcription factor 3
SwissprotQ9FE675e-30ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0V0HV083e-50A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGGLYMA02G43500.15e-42(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.18e-23erf domain protein 9